| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.489337961984] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
| actin cap | 3.811E-3 | 2 | 12 | 1 | 6292 |
| integral to plasma membrane | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| response to osmotic stress | 1.4784E-4 | 2 | 77 | 2 | 6292 |
| response to abiotic stimulus | 3.4287E-4 | 2 | 117 | 2 | 6292 |
| external encapsulating structure organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cellular cell wall organization | 7.5174E-4 | 2 | 173 | 2 | 6292 |
| cellular cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
| cell wall organization or biogenesis | 1.0877E-3 | 2 | 208 | 2 | 6292 |
| response to acid | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| Rho protein signal transduction | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to heat | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| cell morphogenesis involved in conjugation | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| response to temperature stimulus | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transmembrane receptor activity | 2.779E-6 | 2 | 11 | 2 | 6292 |
| receptor activity | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| molecular transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| signal transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |