| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.506071608109] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription factor TFIIIB complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| RNA polymerase I transcription factor complex | 2.859E-3 | 2 | 9 | 1 | 6292 |
| transcription factor TFIID complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription from RNA polymerase II promoter | 2.8267E-3 | 2 | 335 | 2 | 6292 |
| transcription initiation from RNA polymerase III promoter | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
| RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
| transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
| transcription from RNA polymerase I promoter | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| general RNA polymerase II transcription factor activity | 1.0186E-4 | 2 | 64 | 2 | 6292 |
| RNA polymerase II transcription factor activity | 4.2367E-4 | 2 | 130 | 2 | 6292 |
| protein homodimerization activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| identical protein binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| protein dimerization activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |
| RNA polymerase I transcription factor activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| RNA polymerase III transcription factor activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| DNA bending activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| RNA polymerase II transcription mediator activity | 6.9813E-3 | 2 | 22 | 1 | 6292 |