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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.512512757717]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

plasma membrane 1.8077E-3 2 268 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

inorganic anion transport 7.7306E-6 2 18 2 6292
anion transport 1.5158E-5 2 25 2 6292
ion transport 3.6076E-4 2 120 2 6292
sulfate transport 1.2712E-3 2 4 1 6292
phosphate transport 3.4937E-3 2 11 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

inorganic anion transmembrane transporter activity 5.3053E-6 2 15 2 6292
anion transmembrane transporter activity 1.0611E-5 2 21 2 6292
anion:cation symporter activity 3.1786E-4 2 1 1 6292
sodium:phosphate symporter activity 3.1786E-4 2 1 1 6292
sodium:inorganic phosphate symporter activity 3.1786E-4 2 1 1 6292
ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
sulfate transmembrane transporter activity 1.2712E-3 2 4 1 6292
substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
solute:cation symporter activity 1.9064E-3 2 6 1 6292
symporter activity 1.9064E-3 2 6 1 6292
transmembrane transporter activity 2.3578E-3 2 306 2 6292
substrate-specific transporter activity 2.8436E-3 2 336 2 6292
phosphate transmembrane transporter activity 2.859E-3 2 9 1 6292
transporter activity 4.1132E-3 2 404 2 6292
secondary active transmembrane transporter activity 8.248E-3 2 26 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle