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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.541984077829]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

purine nucleoside biosynthetic process 1.0611E-6 2 7 2 6292
purine ribonucleoside salvage 1.0611E-6 2 7 2 6292
ribonucleoside biosynthetic process 1.0611E-6 2 7 2 6292
nucleoside biosynthetic process 1.0611E-6 2 7 2 6292
nucleoside salvage 1.0611E-6 2 7 2 6292
purine ribonucleoside biosynthetic process 1.0611E-6 2 7 2 6292
purine salvage 2.2737E-6 2 10 2 6292
indolalkylamine biosynthetic process 3.3348E-6 2 12 2 6292
tryptophan metabolic process 3.3348E-6 2 12 2 6292
indolalkylamine metabolic process 3.3348E-6 2 12 2 6292
indole and derivative metabolic process 3.3348E-6 2 12 2 6292
indole derivative metabolic process 3.3348E-6 2 12 2 6292
indole derivative biosynthetic process 3.3348E-6 2 12 2 6292
tryptophan biosynthetic process 3.3348E-6 2 12 2 6292
'de novo' pyrimidine base biosynthetic process 3.9411E-6 2 13 2 6292
purine ribonucleoside metabolic process 5.3053E-6 2 15 2 6292
histidine family amino acid metabolic process 6.0632E-6 2 16 2 6292
histidine family amino acid biosynthetic process 6.0632E-6 2 16 2 6292
histidine biosynthetic process 6.0632E-6 2 16 2 6292
'de novo' IMP biosynthetic process 6.0632E-6 2 16 2 6292
purine nucleoside metabolic process 6.0632E-6 2 16 2 6292
histidine metabolic process 6.0632E-6 2 16 2 6292
pyrimidine base biosynthetic process 6.0632E-6 2 16 2 6292
IMP biosynthetic process 6.8716E-6 2 17 2 6292
IMP metabolic process 6.8716E-6 2 17 2 6292
aromatic amino acid family biosynthetic process 7.7306E-6 2 18 2 6292
chorismate metabolic process 7.7306E-6 2 18 2 6292
pyrimidine base metabolic process 7.7306E-6 2 18 2 6292
ribonucleoside metabolic process 8.6401E-6 2 19 2 6292
purine ribonucleoside monophosphate biosynthetic process 8.6401E-6 2 19 2 6292
ribonucleoside monophosphate biosynthetic process 9.6001E-6 2 20 2 6292
purine nucleoside monophosphate biosynthetic process 9.6001E-6 2 20 2 6292
cellular biogenic amine biosynthetic process 9.6001E-6 2 20 2 6292
cellular metabolic compound salvage 1.1672E-5 2 22 2 6292
nucleobase biosynthetic process 1.2783E-5 2 23 2 6292
aromatic amino acid family metabolic process 1.3945E-5 2 24 2 6292
purine ribonucleoside monophosphate metabolic process 1.3945E-5 2 24 2 6292
ribonucleoside monophosphate metabolic process 1.5158E-5 2 25 2 6292
purine nucleoside monophosphate metabolic process 1.5158E-5 2 25 2 6292
nucleoside metabolic process 1.6421E-5 2 26 2 6292
nucleoside monophosphate biosynthetic process 1.7735E-5 2 27 2 6292
cellular amino acid derivative biosynthetic process 1.9099E-5 2 28 2 6292
dicarboxylic acid metabolic process 2.1979E-5 2 30 2 6292
nucleoside monophosphate metabolic process 2.5061E-5 2 32 2 6292
nucleobase metabolic process 2.6678E-5 2 33 2 6292
cellular biogenic amine metabolic process 3.3651E-5 2 37 2 6292
aromatic compound biosynthetic process 3.9411E-5 2 40 2 6292
purine ribonucleotide biosynthetic process 4.3504E-5 2 42 2 6292
ribonucleotide biosynthetic process 5.0022E-5 2 45 2 6292
purine nucleotide biosynthetic process 5.9419E-5 2 49 2 6292
purine ribonucleotide metabolic process 6.6999E-5 2 52 2 6292
ribonucleotide metabolic process 7.5032E-5 2 55 2 6292
purine nucleotide metabolic process 8.3521E-5 2 58 2 6292
cellular amino acid derivative metabolic process 9.2464E-5 2 61 2 6292
nucleotide biosynthetic process 1.2202E-4 2 70 2 6292
heterocycle biosynthetic process 1.2202E-4 2 70 2 6292
cellular aromatic compound metabolic process 1.6371E-4 2 81 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 2.0236E-4 2 90 2 6292
nucleobase, nucleoside and nucleotide biosynthetic process 2.0236E-4 2 90 2 6292
cellular amino acid biosynthetic process 3.2544E-4 2 114 2 6292
amine biosynthetic process 3.7294E-4 2 122 2 6292
nucleotide metabolic process 4.1068E-4 2 128 2 6292
nucleoside phosphate metabolic process 4.1068E-4 2 128 2 6292
organic acid biosynthetic process 4.846E-4 2 139 2 6292
carboxylic acid biosynthetic process 4.846E-4 2 139 2 6292
nucleobase, nucleoside and nucleotide metabolic process 6.1875E-4 2 157 2 6292
heterocycle metabolic process 7.3441E-4 2 171 2 6292
cellular amino acid metabolic process 9.9543E-4 2 199 2 6292
cellular amine metabolic process 1.2395E-3 2 222 2 6292
amine metabolic process 1.4856E-3 2 243 2 6292
cellular amino acid and derivative metabolic process 1.4856E-3 2 243 2 6292
cellular nitrogen compound biosynthetic process 1.5351E-3 2 247 2 6292
small molecule biosynthetic process 2.42E-3 2 310 2 6292
organic acid metabolic process 2.793E-3 2 333 2 6292
oxoacid metabolic process 2.793E-3 2 333 2 6292
carboxylic acid metabolic process 2.793E-3 2 333 2 6292
cellular ketone metabolic process 3.0157E-3 2 346 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribose phosphate diphosphokinase activity 7.579E-7 2 6 2 6292
diphosphotransferase activity 1.819E-6 2 9 2 6292
transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292

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