From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.57870174464] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
COPII vesicle coat | 2.5415E-3 | 2 | 8 | 1 | 6292 |
ER to Golgi transport vesicle membrane | 2.5415E-3 | 2 | 8 | 1 | 6292 |
transport vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
ER to Golgi transport vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ER to Golgi vesicle-mediated transport | 1.7194E-4 | 2 | 83 | 2 | 6292 |
Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
membrane budding | 1.5888E-3 | 2 | 5 | 1 | 6292 |
vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
intra-Golgi vesicle-mediated transport | 6.9813E-3 | 2 | 22 | 1 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
nuclear pore organization | 8.8811E-3 | 2 | 28 | 1 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Golgi to plasma membrane transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |