From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.58086971822] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
ARN2 |
|
|
|
FET3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
iron ion transport | 7.7306E-6 | 2 | 18 | 2 | 6292 |
di-, tri-valent inorganic cation transport | 2.5061E-5 | 2 | 32 | 2 | 6292 |
transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
siderophore metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
response to copper ion | 1.2712E-3 | 2 | 4 | 1 | 6292 |
high-affinity iron ion transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
iron ion transmembrane transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
siderophore-iron transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
iron assimilation by chelation and transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
iron assimilation | 1.9064E-3 | 2 | 6 | 1 | 6292 |
iron chelate transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
siderophore transport | 2.859E-3 | 2 | 9 | 1 | 6292 |
response to metal ion | 5.7138E-3 | 2 | 18 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.