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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.588169136625]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone deacetylase complex 1.2783E-5 2 23 2 6292
chromatin remodeling complex 2.4511E-4 2 99 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone deacetylation 1.7735E-5 2 27 2 6292
protein amino acid deacetylation 2.0514E-5 2 29 2 6292
covalent chromatin modification 1.9342E-4 2 88 2 6292
histone modification 1.9342E-4 2 88 2 6292
chromatin modification 7.0879E-4 2 168 2 6292
chromatin organization 1.036E-3 2 203 2 6292
negative regulation of meiosis 2.5415E-3 2 8 1 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
protein modification process 6.278E-3 2 499 2 6292
regulation of meiotic cell cycle 6.9813E-3 2 22 1 6292
regulation of meiosis 6.9813E-3 2 22 1 6292
chromosome organization 7.7677E-3 2 555 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone deacetylase activity 2.5061E-5 2 32 2 6292
protein deacetylase activity 2.5061E-5 2 32 2 6292
deacetylase activity 3.0063E-5 2 35 2 6292
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 5.6994E-5 2 48 2 6292
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.5966E-4 2 80 2 6292
NAD-independent histone deacetylase activity 2.224E-3 2 7 1 6292
NAD-dependent protein deacetylase activity 2.859E-3 2 9 1 6292
NAD-dependent histone deacetylase activity 2.859E-3 2 9 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle