| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.595585195002] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ARG5,6 |
|
|
|
| IDP1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial matrix | 7.7811E-4 | 2 | 176 | 2 | 6292 |
| mitochondrial lumen | 7.7811E-4 | 2 | 176 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
| mitochondrial nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| acetylglutamate kinase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| N-acetyl-gamma-glutamyl-phosphate reductase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| isocitrate dehydrogenase (NADP+) activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| isocitrate dehydrogenase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| phosphotransferase activity, carboxyl group as acceptor | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors | 7.9314E-3 | 2 | 25 | 1 | 6292 |