| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.628406545657] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| VPS45 |
|
|
|
| VTI1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi membrane | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| integral to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| intrinsic to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi to vacuole transport | 1.3945E-5 | 2 | 24 | 2 | 6292 |
| post-Golgi vesicle-mediated transport | 1.151E-4 | 2 | 68 | 2 | 6292 |
| lysosomal transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| endosome to lysosome transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| vacuolar transport | 3.312E-4 | 2 | 115 | 2 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| intra-Golgi vesicle-mediated transport | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
| vesicle fusion | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |