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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.633718686725]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
GCN5
  • SLIK (SAGA-like) complex
  • Ada2/Gcn5/Ada3 transcription activator complex
  • SAGA complex
    		•
  • chromatin modification
  • histone acetylation
    		•
  • histone acetyltransferase activity
  • transcription coactivator activity
    		•
    SAS3
  • nuclear nucleosome
  • histone acetyltransferase complex
    		•
  • chromatin modification
  • chromatin silencing at silent mating-type cassette
  • chromatin silencing at telomere
    		•
  • histone acetyltransferase activity
  • acetyltransferase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    histone acetyltransferase complex 4.7798E-5 2 44 2 6292
    nucleoplasm part 1.5102E-3 2 245 2 6292
    Ada2/Gcn5/Ada3 transcription activator complex 1.5888E-3 2 5 1 6292
    nucleoplasm 1.7541E-3 2 264 2 6292
    nuclear nucleosome 3.811E-3 2 12 1 6292
    nucleosome 3.811E-3 2 12 1 6292
    SLIK (SAGA-like) complex 5.0798E-3 2 16 1 6292
    nuclear lumen 5.1728E-3 2 453 2 6292
    SAGA complex 6.9813E-3 2 22 1 6292
    SAGA-type complex 7.2981E-3 2 23 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    chromatin modification 7.0879E-4 2 168 2 6292
    chromatin organization 1.036E-3 2 203 2 6292
    chromosome organization 7.7677E-3 2 555 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    histone acetyltransferase activity 6.8716E-6 2 17 2 6292
    lysine N-acetyltransferase activity 6.8716E-6 2 17 2 6292
    N-acetyltransferase activity 2.6678E-5 2 33 2 6292
    N-acyltransferase activity 3.552E-5 2 38 2 6292
    acetyltransferase activity 6.1895E-5 2 50 2 6292
    transferase activity, transferring acyl groups other than amino-acyl groups 2.1151E-4 2 92 2 6292
    acyltransferase activity 2.1151E-4 2 92 2 6292
    transferase activity, transferring acyl groups 2.8654E-4 2 107 2 6292
    transcription coactivator activity 6.6645E-3 2 21 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle