| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.649856320831] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| PDI1 |
|
|
|
| SCJ1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endoplasmic reticulum lumen | 1.4147E-6 | 2 | 8 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein folding | 1.5173E-4 | 2 | 78 | 2 | 6292 |
| ER-nucleus signaling pathway | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| endoplasmic reticulum unfolded protein response | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| cellular response to biotic stimulus | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| cellular response to unfolded protein | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| cellular response to protein stimulus | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| response to endoplasmic reticulum stress | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| response to unfolded protein | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to biotic stimulus | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cellular response to organic substance | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| response to protein stimulus | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein disulfide oxidoreductase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| protein disulfide isomerase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| intramolecular oxidoreductase activity, interconverting keto- and enol-groups | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| intramolecular oxidoreductase activity, transposing S-S bonds | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| disulfide oxidoreductase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| chaperone binding | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| intramolecular oxidoreductase activity | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| oxidoreductase activity, acting on sulfur group of donors | 6.3477E-3 | 2 | 20 | 1 | 6292 |