YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.667554859497]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CAT2
  • peroxisome
  • mitochondrion
  • peroxisomal matrix
    		•
  • carnitine metabolic process
    		•
  • carnitine O-acetyltransferase activity
    		•
    YAT1
  • mitochondrion
    		•
  • alcohol metabolic process
  • carnitine metabolic process
    		•
  • carnitine O-acetyltransferase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    microbody lumen 4.4455E-3 2 14 1 6292
    peroxisomal matrix 4.4455E-3 2 14 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    carnitine metabolic process 1.5158E-7 2 3 2 6292
    betaine metabolic process 1.5158E-7 2 3 2 6292
    cellular biogenic amine metabolic process 3.3651E-5 2 37 2 6292
    vitamin metabolic process 8.3521E-5 2 58 2 6292
    water-soluble vitamin metabolic process 8.3521E-5 2 58 2 6292
    cellular amino acid derivative metabolic process 9.2464E-5 2 61 2 6292
    monocarboxylic acid metabolic process 4.5024E-4 2 134 2 6292
    cellular amine metabolic process 1.2395E-3 2 222 2 6292
    amine metabolic process 1.4856E-3 2 243 2 6292
    cellular amino acid and derivative metabolic process 1.4856E-3 2 243 2 6292
    organic acid metabolic process 2.793E-3 2 333 2 6292
    oxoacid metabolic process 2.793E-3 2 333 2 6292
    carboxylic acid metabolic process 2.793E-3 2 333 2 6292
    cellular ketone metabolic process 3.0157E-3 2 346 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    carnitine O-acetyltransferase activity 1.5158E-7 2 3 2 6292
    carnitine O-acyltransferase activity 1.5158E-7 2 3 2 6292
    O-acetyltransferase activity 1.819E-6 2 9 2 6292
    O-acyltransferase activity 1.0611E-5 2 21 2 6292
    acetyltransferase activity 6.1895E-5 2 50 2 6292
    transferase activity, transferring acyl groups other than amino-acyl groups 2.1151E-4 2 92 2 6292
    acyltransferase activity 2.1151E-4 2 92 2 6292
    transferase activity, transferring acyl groups 2.8654E-4 2 107 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle