smg-7 is required for mRNA surveillance in Caenorhabditis elegans

Genetics. 1999 Feb;151(2):605-16. doi: 10.1093/genetics/151.2.605.

Abstract

Eukaryotic mRNAs that contain premature stop codons are degraded more rapidly than their wild-type counterparts, a phenomenon termed "nonsense-mediated mRNA decay" (NMD) or "mRNA surveillance." Functions of six previously described Caenorhabditis elegans genes, smg-1 through smg-6, are required for NMD. Whereas nonsense mutant mRNAs are unstable in smg(+) genetic backgrounds, such mRNAs have normal stability in smg(-) backgrounds. Previous screens for smg mutations have likely not identified all genes involved in NMD, but efforts to identify additional smg genes are limited by the fact that almost 90% of smg mutations identified in genome-wide screens are alleles of smg-1, smg-2, or smg-5. We describe a modified screen for smg mutations that precludes isolating alleles of smg-1, smg-2, and smg-5. Using this screen, we have identified and cloned smg-7, a previously uncharacterized gene that we show is required for NMD. smg-7 is predicted to encode a novel protein that contains an acidic carboxyl terminus and two probable tetratricopeptide repeats. We provide evidence that smg-7 is cotranscribed with the previously characterized gene lin-45 and show that null alleles of smg-7 confer a temperature-sensitive defect in NMD.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Caenorhabditis elegans / genetics*
  • Caenorhabditis elegans Proteins*
  • Codon, Terminator / genetics*
  • Gene Expression Regulation
  • Helminth Proteins / genetics*
  • Molecular Sequence Data
  • Mutation
  • Protein Biosynthesis*
  • RNA, Messenger / genetics*
  • Sequence Alignment

Substances

  • Caenorhabditis elegans Proteins
  • Codon, Terminator
  • Helminth Proteins
  • RNA, Messenger
  • SMG-7 protein, C elegans

Associated data

  • GENBANK/AF089729