Sequence analysis of a 14.2 kb fragment of Saccharomyces cerevisiae chromosome XIV that includes the ypt53, tRNALeu and gsr m2 genes and four new open reading frames

Yeast. 1996 May;12(6):599-608. doi: 10.1002/(SICI)1097-0061(199605)12:6%3C599::AID-YEA938%3E3.0.CO;2-9.

Abstract

As part of the EU yeast genome program, a fragment of 14,262 bp from the left arm of Saccharomyces cerevisiae chromosome XIV has been sequenced. This fragment corresponds to cosmid 14-14b and is located roughly 130 kb from the centromere. It contains four new open reading frames which encode potential proteins of more than 99 amino acids, as well as the ypt53, tRNALeu and gsr moffenes. The putative protein N2212 is similar to the ribosomal protein S7 from humans. N2215 contains several predicted transmembrane elements. N2231 contains regions which are rich in acidic, as well as basic, residues which could from alpha-helical structures. Similar regions are found in a variety of proteins including glutamic acid rich protein, trichohyalin, caldesmon, Tb-29 and several cytoskeleton-interacting proteins.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Fungal Proteins / genetics*
  • GTP Phosphohydrolases / genetics*
  • GTP-Binding Proteins / genetics*
  • Humans
  • Membrane Proteins / genetics
  • Molecular Sequence Data
  • RNA, Transfer, Leu / genetics*
  • Reading Frames
  • Recombination, Genetic
  • Ribosomal Proteins / genetics
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae Proteins*
  • Sequence Homology, Amino Acid
  • rab GTP-Binding Proteins*

Substances

  • Fungal Proteins
  • Membrane Proteins
  • RNA, Transfer, Leu
  • Ribosomal Proteins
  • Saccharomyces cerevisiae Proteins
  • GTP Phosphohydrolases
  • GTP-Binding Proteins
  • YPT53 protein, S cerevisiae
  • rab GTP-Binding Proteins

Associated data

  • GENBANK/X85811