Rpm2p, a protein subunit of mitochondrial RNase P, physically and genetically interacts with cytoplasmic processing bodies

Nucleic Acids Res. 2007;35(4):1301-11. doi: 10.1093/nar/gkm023. Epub 2007 Jan 31.

Abstract

The RPM2 gene of Saccharomyces cerevisiae codes for a protein subunit of mitochondrial RNase P and has another unknown essential function. We previously demonstrated that Rpm2p localizes to the nucleus and acts as a transcriptional activator. Rpm2p influences the level of mRNAs that encode components of the mitochondrial import apparatus and essential mitochondrial chaperones. Evidence is presented here that Rpm2p interacts with Dcp2p, a subunit of mRNA decapping enzyme in the two-hybrid assay, and is enriched in cytoplasmic P bodies, the sites of mRNA degradation and storage in yeast and mammalian cells. When overexpressed, GFP-Rpm2p does not impact the number and size of P bodies; however, it prevents their disappearance when translation elongation is inhibited by cycloheximide. Proteasome mutants, ump1-2 and pre4-2, that bypass essential Rpm2p function, also stabilize P bodies. The stabilization of P bodies by Rpm2p may occur through reduced protein degradation since GFP-Rpm2p expressing cells have lower levels of ubiquitin. Genetic analysis revealed that overexpression of Dhh1p (a DEAD box helicase localized to P bodies) suppresses temperature-sensitive growth of the rpm2-100 mutant. Overexpression of Pab1p (a poly (A)-binding protein) also suppresses rpm2-100, suggesting that Rpm2p functions in at least two aspects of mRNA metabolism. The results presented here, and the transcriptional activation function demonstrated earlier, implicate Rpm2p as a coordinator of transcription and mRNA storage/decay in P bodies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cytoplasmic Structures / chemistry
  • Cytoplasmic Structures / metabolism
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / metabolism
  • Endoribonucleases
  • Gene Expression Regulation, Fungal*
  • Mitochondria / enzymology
  • Molecular Chaperones / genetics
  • Peptide Chain Elongation, Translational
  • Poly(A)-Binding Proteins / genetics
  • Poly(A)-Binding Proteins / metabolism
  • Protein Subunits / analysis
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • RNA Processing, Post-Transcriptional
  • Ribonuclease P / analysis
  • Ribonuclease P / genetics*
  • Ribonuclease P / metabolism*
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / growth & development
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / analysis
  • Saccharomyces cerevisiae Proteins / genetics*
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Temperature
  • Two-Hybrid System Techniques
  • Ubiquitin / metabolism

Substances

  • Molecular Chaperones
  • Poly(A)-Binding Proteins
  • Protein Subunits
  • Saccharomyces cerevisiae Proteins
  • Ubiquitin
  • pab1 protein, S cerevisiae
  • proteassemblin
  • DCP2 protein, S cerevisiae
  • Endoribonucleases
  • RPM2 protein, S cerevisiae
  • Ribonuclease P
  • DHH1 protein, S cerevisiae
  • DEAD-box RNA Helicases