Synthetic genetic array analysis of the PtdIns 4-kinase Pik1p identifies components in a Golgi-specific Ypt31/rab-GTPase signaling pathway

Mol Biol Cell. 2005 Feb;16(2):776-93. doi: 10.1091/mbc.e04-08-0700. Epub 2004 Dec 1.

Abstract

Phosphorylated derivatives of phosphatidylinositol are essential regulators of both endocytic and exocytic trafficking in eukaryotic cells. In Saccharomyces cerevisiae, the phosphatidylinositol 4-kinase, Pik1p generates a distinct pool of PtdIns(4)P that is required for normal Golgi structure and secretory function. Here, we utilize a synthetic genetic array analysis of a conditional pik1 mutant to identify candidate components of the Pik1p/PtdIns(4)P signaling pathway at the Golgi. Our data suggest a mechanistic involvement for Pik1p with a specific subset of Golgi-associated proteins, including the Ypt31p rab-GTPase and the TRAPPII protein complex, to regulate protein trafficking through the secretory pathway. We further demonstrate that TRAPPII specifically functions in a Ypt31p-dependent pathway and identify Gyp2p as the first biologically relevant GTPase activating protein for Ypt31p. We propose that multiple stage-specific signals, which may include Pik1p/PtdIns(4)P, TRAPPII and Gyp2p, impinge upon Ypt31 signaling to regulate Golgi secretory function.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 1-Phosphatidylinositol 4-Kinase / genetics
  • 1-Phosphatidylinositol 4-Kinase / metabolism*
  • 1-Phosphatidylinositol 4-Kinase / ultrastructure
  • Blotting, Western
  • Chitin Synthase
  • GTPase-Activating Proteins / metabolism
  • Gene Expression Regulation, Enzymologic
  • Golgi Apparatus / metabolism*
  • Golgi Apparatus / ultrastructure
  • Green Fluorescent Proteins / metabolism
  • Membrane Proteins / metabolism
  • Microarray Analysis*
  • Microscopy, Confocal
  • Models, Biological
  • Mutation
  • Precipitin Tests
  • Protein Structure, Tertiary
  • Protein Transport
  • R-SNARE Proteins
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae / ultrastructure
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Saccharomyces cerevisiae Proteins / ultrastructure
  • Signal Transduction*
  • Temperature
  • Vesicular Transport Proteins / metabolism
  • rab GTP-Binding Proteins / chemistry
  • rab GTP-Binding Proteins / metabolism*

Substances

  • GTPase-Activating Proteins
  • Gyp2 protein, S cerevisiae
  • Membrane Proteins
  • R-SNARE Proteins
  • SNC2 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • TRS130 protein, S cerevisiae
  • TRS65 protein, S cerevisiae
  • Vesicular Transport Proteins
  • transport protein particle, TRAPP
  • Green Fluorescent Proteins
  • CHS3 protein, S cerevisiae
  • Chitin Synthase
  • 1-Phosphatidylinositol 4-Kinase
  • PIK1 protein, S cerevisiae
  • rab GTP-Binding Proteins